5  Pendalaman Materi 3

5.1 🧪 How to Run the Practice Sessions

In the final part of the course, we include hands-on practice sessions delivered as interactive Jupyter Notebooks. You can run the materials directly on GitHub Codespaces or on your own computer. You will need to create a GitHub account and install VS Code in your computer first.

Follow the instructions below to get started:

5.1.1 🔧 Run on GitHub Codespaces and Open in VS Code

GitHub Codespaces allows you to run things in the cloud with VS code as the interface.

Steps:

1. Go to the course repository: https://github.com/lab-biotek-bio-ugm/BISB211203

2. Click the green “Code” button, then choose “Open with Codespaces” → “New codespace”.

3. Open a new tab and open https://github.com/codespaces. Find your Virtual Machine, at the bottom and click the three dots "..." on the right of the VM, then load the codespace in Visual Studio.

4. After the Codespace loads, open the terminal and run the following commands:

   conda init

5. It will ask you to close and reopen the terminal. You can do this by clicking the + button on the right top corner of the terminal.

6. Create the environment by:

   conda env create -f environment.yml

7. Activate the environment by:

   conda activate BISB211203

8. Launch JupyterLab by running:

   jupyter lab

9. The JupyterLab interface will launch in your browser. If it does not open automatically, copy the URL displayed in the terminal (e.g., starting with http://127.0.0.1:8888) and paste it into your browser.

10. You can now open the notebooks (e.g., 03_T-test.ipynb) and start the exercises.